刘丙强

  • 刘丙强

  • 1983年5月生;副教授;硕士生导师
  • 办公室:知新楼B822
  • 电子邮箱:bingqiang@sdu.edu.cn
  • 研究方向

  • 生物信息学,组合最优化,图论及其应用
  • 教育经历

  • 2007.01—2010.01,美国佐治亚大学,联合培养博士;
  • 2006.09—2010.07,山东大学数学学院,运筹学与控制论,博士学位;
  • 2003.09—2006.07,山东大学数学学院,运筹学与控制论,硕士学位;
  • 1999.09—2003.07,山东大学数学学院,基础数学,学士学位;
  • 工作经历

  • 2013.09—,山东大学数学学院,副教授;
  • 2010.07—2013.08,山东大学数学学院,讲师;
  • 科研项目

  • 2014-08, 基于高通量RNA-seq数据转录组拼接的关键技术与算法研究, 国家自然科学基金重点项目(信息部),参与人;
  • 2013-08,基于ChIP-seq数据和系统发生信息的调控模体预测,国家自然科学基金青年基金,负责人;
  • 2012-10,仅基于RNA-Seq数据拼装可变剪接转录组的计算方法研究,国家自然科学基金面上项目,第一参与人;
  • 2011-07,基于系统发生足迹法的原核生物调控模体预测,山东省自然科学基金委青年基金,负责人;
  • 2011-11,原核生物共调控基因的计算预测,山东省博士后创新基金,负责人;
  • 科研论文(*通讯作者,#共同第一作者)

  1. An algorithmic perspective of de-novo cis-regulatory motif finding based on ChIP-seq data, Bingqiang Liu, Jinyu Yang, Yang Li, Adam McDermaid, Qin Ma*, Briefings in Bioinformatics,March,2017. (SCI, IF 8.399)
  2. An integrative and applicable phylogenetic footprinting framework for cis-regulatory motifs identification in prokaryotic genomes, Bingqiang Liu, Hanyuan Zhang, Chuan Zhou, Guojun Li, Anne Fennell, Guanghui Wang, Yu Kang, Qi Liu and Qin Ma*, BMC Genomics 2016, 17:578. (SCI, IF 3.867)
  3. Bacterial regulon modeling and prediction based on systematic cis regulatory motif analyses, Bingqiang Liu, Chuan Zhou, Guojun Li*, Hanyuan Zhang, Erliang Zeng, Qi Liu and Qin Ma*, Scientific Reports 2016, 6:23030. (SCI, IF 5.228)
  4. An Insight into Species from Same Descendent Aspect and the Application into Clostridia, Zhenjia Wang#, Chuan Zhou#, Zheng Chang, Bingqiang Liu*, Qin Ma and Guojun Li*, Current Bioinformatics 2016, 11(5). (SCI, IF 0.770)
  5. BinPacker: Packing-Based De Novo Transcriptome Assembly from RNA-seq Data. Juntao Liu, Guojun Li*, Zheng Chang, Ting Yu, Bingqiang Liu, Rick McMullen, Pengyin Chen, Xiuzhen Huang*, PloS Computational Biology 2016, 12(2): e1004772. (SCI, IF 4.620)
  6. The Two-component System RsrS-RsrR Regulates the Tetrathionate Intermediate Pathway for Thiosulfate Oxidation in Acidithiobacillus caldus, Zhaobao Wang, Yaqing Li, Jianqun Lin, Xin Pang, Xiangmei Liu, Bingqiang Liu, Rui Wang, Chengjia Zhang, Yan Wu, Jianqiang Lin, Linxu Chen, Accepted by Frontiers in Microbiology, 2016. (SCI, IF 4.128)
  7. Goldindec: A Novel Algorithm for Raman Spectrum Baseline Correction, Juntao Liu, Jianyang Sun, Xiuzhen Huang, Guojun Li, Binqiang Liu*, Applied spectroscopy 2015, 69 (7): 834-842. (SCI, IF 1.798)
  8. Revisiting operons: an analysis of the landscape of transcriptional units in E. coli, Xizeng Mao#, Qin Ma#, Bingqiang Liu, Xin Chen, Hanyuan Zhang and Ying Xu, BMC Bioinformatics 2015, 16:356. (SCI, IF 2.576)
  9. Global O-GlcNAc levels modulate transcription of the adipocyte secretome during chronic insulin resistance, Edith E. Wollaston-Hayden, Ruth B. S. Harris, Bingqiang Liu, Robert Bridger, Ying Xu and Lance Wells*, Frontiers in Endocrinology 2015, (5), 223.
  10. Neighbor sum distinguishing total colorings of planar graphs, Hualong Li, Laihao Ding, Bingqiang Liu, Guanghui Wang*, Journal of Combinatorial Optimization, 2015, 30(3): 675-688, (SCI, IF 1.043)
  11. New Insights into Clostridia Through Comparative Analyses of Their 40 Genomes, Chuan Zhou#, Qin Ma#, Xizeng Mao#, Bingqiang Liu, Yanbin Yin and Ying Xu*, Bioenerg. Res. 2014, 7:1481–1492. (SCI, 3.541)
  12. DMINDA: an integrated web server for DNA motif identification and analyses. Qin Ma, Hanyuan Zhang, Xizeng Mao, Chuan Zhou, Bingqiang Liu, Xin Chen and Ying Xu*, Nucleic Acids Res 2014, 42, W12-19. (sci, IF 8.278)
  13. Bi-factor Analysis Based on Noise-Reduction (BIFANR): A New Algorithm for Detecting Coevolving Amino Acid Sites in Proteins, Juntao Liu, Xiaoyun Duan, Jianyang Sun, Yanbin Yin, Lushan Wang, Guojun Li, Bingqiang Liu*, PLOS One 2013, Volume 8, Issue 11, e79764. (SCI, IF 4.092, Corresponding author)
  14. An integrated toolkit for accurate prediction and analysis of cis-regulatory motifs at a genome scale, Qin Ma#, Bingqiang Liu#, Chuan Zhou, Yanbin Yin, Guojun Li, Ying Xu, Bioinformatics 2013 29 (18), 2261-2268. (SCI, IF 5.323, Co-first).
  15. Neighbor sum distinguishing total colorings of K 4-minor free graphs, Hualong Li, Bingqiang Liu, Guanghui Wang, Frontiers of Mathematics in China, 2013, 1-16. (SCI, IF 0.323).
  16. A note on rainbow matchings, Guanghui Wang*, Bingqiang Liu, Guizhen Liu, Discrete Mathematics, Algorithms and Applications 2013, 5(4): 1350028.
  17. A New Framework for Identifying cis Regulatory Motifs in Prokaryotes, Guojun. Li#, Bingqiang Liu#, Qin Ma, Ying Xu, Nucleic Acids Research,, Vol. 39, No. 7, e42, 2011. (sci, IF 8.278, Co-first).
  18. Accurate Recognition of cis Regulatory Motifs with the Correct Lengths in Prokaryotic Genomes, Guojun. Li#, Bingqiang Liu#, Ying Xu, Nucleic Acids Research, Vol. 38, No. 2, e12, 2010. (sci, IF 8.026, Co-first).
  19. A Close-to Optimum Bi-clustering Algorithm for Microarray Gene Expression Data. Guojun Li, Qin Ma, Bingqiang Liu, Haibao Tang, Andrew H. Paterson, Ying Xu, CSB 2009, Stanford.
  20. Sorting signed permutations by fixed-length reversals. Xingqin Qi, Guojun Li, Jichang Wu, Bingqiang Liu, International Journal of Functions of Computer Science. Vol.17, No.4, 2006, Page 993-948. (sci, IF 0.554).